Wikipedia:WikiProject Tree of Life/Newsletter/014

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May 2020—Issue 014

Tree of Life

Welcome to the Tree of Life newsletter!

Newly recognized content
Lythronax by FunkMonk, Lythronaxargestes and IJReid Meerkat by Sainsf, reviewed by Chiswick Chap Borchgrevinkium by Super Dromaeosaurus, reviewed by Amitchell125 Nakalipithecus by Dunkleosteus77, reviewed by Gog the Mild Scanisaurus by Ichthyovenator, reviewed by Gog the Mild Sand cat by BhagyaMani, reviewed by Aven13 Pigs in culture by Chiswick Chap, reviewed by Sainsf Sun bear by Sainsf, reviewed by Chiswick Chap Megacephalosaurus by Macrophyseter, reviewed by Aven13 Cinnamon red bat by Enwebb, reviewed by Dunkleosteus77 Banteng by Sainsf, reviewed by Chiswick Chap Cartorhynchus by Lythronaxargestes, reviewed by Dunkleosteus77 Black-footed cat by BhagyaMani, reviewed by Amitchell125 Homo ergaster by Ichthyovenator, reviewed by Dunkleosteus77 Black coral by Aven13, reviewed by Sainsf Heuglin's gazelle by Sainsf, reviewed by The Rambling Man Australopithecus garhi by Dunkleosteus77, reviewed by Hog Farm Chororapithecus by Dunkleosteus77, reviewed by IJReid Ornithocheiromorpha by JurassicClassic767, reviewed by IJReid

Newly nominated content
Gigantorhynchus by Mattximus Leech by LittleJerry, Chiswick Chap and Cwmhiraeth List of mephitids by PesN Sand cat by BhagyaMani Cinnamon red bat by Enwebb Kristianstad Basin by Ichthyovenator Nakalipithecus by Dunkleosteus77 Scanisaurus by Ichthyovenator Sun bear by Sainsf Heuglin's gazelle by Sainsf Black coral by Aven13 Australopithecus garhi by Dunkleosteus77 Chororapithecus by Dunkleosteus77 Northern crested newt by Tylototriton Megacephalosaurus by Macrophyseter Banteng by Sainsf Cartorhynchus by Lythronaxargestes Ornithocheiromorpha by JurassicClassic767 Black-footed cat by BhagyaMani Bat virome by Enwebb Echinodon by IJReid Homo ergaster by Ichthyovenator Dwarf dog-faced bat by Enwebb Doedicurus by Dunkleosteus77 Zebra by LittleJerry

News at a glance

This month saw two Tree of Life editors gain the mop: CaptainEek (WikiProjects Birds and Plants) and Cwmhiraeth (familiar name at DYK, WikiProjects Plants, Animals, and Insects)
The April – May GAN backlog drive finished up, clearing the queue from nearly 700 outstanding nominations to about 350.

Interview with Jts1882

This month we're joined by Jts1882, who is active in depicting evolutionary relationship of taxa via cladograms. Part of this includes responding to cladogram requests, where interested editors can have cladograms made without using the templates themselves.

How did you come to be interested in systematics? Are you interested in systematics broadly, or is there a particular group you're most fond of?

As long as I can remember I’ve been interested in nature, starting with the animals and plants in the garden, school grounds, and local wood, and then more general wildlife worldwide. An interest in how things are classified grew from this. I like things to be organised and understanding the relationships between things and systems (not just living things) is a big part of that. Biology was always my favourite subject in school and took up a disproportionate part of my time. My interest in systematics is broad as I’d like to comprehend the whole tree of life, but the cat family is my favourite group.

What's the background behind cladogram requests? I see that it isn't a very old part of the Tree of Life

Well I can’t take any credit for the cladogram requests page, although I help out there sometimes. It was created by IJReid and there are several people who have helped there more than me. I think the motivation is that creating cladograms requires a knowledge of the templates that is daunting for many editors. It was one way of helping people who want to focus on content creation.

My main contribution to the cladograms is converting the {{clade}} template to use a Lua module. The template code was extremely difficult to follow and had to be repetitive (I can only admire the efforts of those who got the thing to work in the first place). The conversion to Lua made it more efficient, allowed larger and deeper cladograms, plus facilitating the introduction of new features. The cladogram request page was recently the venue for discussion on making time calibrated cladograms, which is now possible, if not particularly user friendly.

What advice do you have for an editor who wants to learn how to make cladograms?

The same advice I would give to someone facing any computer problem, just try it out. Start by taking existing code for a cladogram and make changes yourself. The main advice would be to format it properly so indents match the brackets vertically. Of course, not everyone wants to learn and if someone prefers to focus on article content there is the cladogram request page.

Examples of cladograms Jts1882 has created, showing different proposed clades for Neoaves

Jarvis et al (2014)

Prum et al (2015)

Suh (2016) — a hard polytomy

Columbea

	Mirandornithes (flamingos, grebes)

	Columbimorphae (pigeons, mesites, sandgrouse)

Passerea

Otidae

	Otidimorphae (cuckoos, bustards, turacos)

	Strisores (hummingbirds, swifts, nightbirds)

Gruae

Opisthocomiformes (hoatzin)

Gruimorphae

	Gruiformes (cranes, rails)

	Charadriiformes (shorebirds)

Ardeae

	Aequornithes (core waterbirds)

	Eurypgimorphae (sunbittern, kagu, tropicbirds)

Telluraves

	Afroaves

	Australaves

(core landbirds)

Strisores (hummingbirds, swifts, nightbirds)

Columbaves

	Columbimorphae (pigeons, mesites, sandgrouse)

	Otidimorphae (cuckoos, bustards, turacos)

Gruiformes (cranes, rails)

Aequorlitornithes

	Charadriiformes (shorebirds)

	Mirandornithes(flamingoes, grebes)

Ardeae

	Aequornithes (core waterbirds)

	Eurypgimorphae (sunbittern, kagu, tropicbirds)

(waterbirds)

Inopinaves

Opisthocomiformes (hoatzin)

Telluraves

	Afroaves

	Australaves

(core landbirds)

Columbimorphae (pigeons, mesites, sandgrouse)

Otidimorphae (cuckoos, bustards, turacos)

Strisores (hummingbirds, swifts, nightbirds)

Opisthocomiformes (hoatzin)

Gruiformes (cranes, rails)

Charadriiformes (shorebirds)

Mirandornithes (flamingoes, grebes)

Ardeae

	Aequornithes (core waterbirds)

	Eurypgimorphae (sunbittern, kagu, tropicbirds)

Telluraves

	Afroaves

	Australaves

(core landbirds)

Do you have any personal projects or goals you're working towards on Wikipedia?

As I said I like organisation and systems. So I find efforts like the automated taxobox system and {{taxonbar}} appealing. I would like to see more reuse of the major phylogenetic trees on Wikipedia with more use of consensus trees on the higher taxa. Too often they get edited based on one recent report and/or without proper citation. Animals and bilateria are examples where this is a problem.

Towards this I have been working on a system of phylogeny templates that can be reused flexibly. The {{Clade transclude}} template allows selective transclusion, so the phylogenetic trees on one page can be reused with modifications, i.e. can be pruned and grafted, used with or without images, with or without collapsible elements, etc. I have an example for the Angiosperm Phylogeny Group classification (see {{Phylogeny/APG IV}}) and one for squamates that also includes collapsible elements (see {{Phylogeny/Squamata}}).

A second project is to have a modular reference system for taxonomic resources. I have made some progress along this lines with the {{BioRef}} template. This started off simply as a way of hardlinking to Catalog of Fishes pages and I’ve gradually expanded it to cover other groups (e..g. FishBase, AmphibiaWeb and Amphibian Species of the World, Reptile Database, the Mammalian Diversity Database). The modular nature is still rudimentary and needs a rewrite before it is ready for wider use.

What would surprise your fellow editors to learn about your life off-Wikipedia?

I don’t think there is anything particularly surprising or interesting about my life. I’ve had an academic career as a research scientist but I don't think anyone could guess the area from my Wikipedia edits. I prefer to work on areas where I am learning at the same time. This why I spend more time with neglected topics (e.g. mosses at the moment). I start reading and then find that I’m not getting the information I want.

Anything else you'd like us to know?

My interest in the classification of things goes beyond biology. I am fascinated by mediaeval attempts to classify knowledge, such as Bacon in his The Advancement of Learning and Diderot and d’Alembert in their Encyclopédie. They were trying to come up with a universal scheme of knowledge just as the printing press was allowing greater dissemination of knowledge.

With the internet we are seeing a new revolution in knowledge dissemination. Just look at how we could read research papers on the COVID virus within weeks of its discovery. With an open internet, everyone has access, not just those with the luxury of books at home or good libraries. Sites like the Biodiversity Heritage Library allow you to read old scientific works without having to visit dusty university library stack rooms, while the taxonomic and checklist databases provide instant information on millions of living species. In principle, the whole world can now find out about anything, even if Douglas Adams warned we might be disinclined to do so.

This is why I like Wikipedia, with all its warts, it’s a means of organising the knowledge on the internet. In just two decades it’s become a first stop for knowledge and hopefully a gateway to more specialised sources. Perhaps developing this latter aspect, beyond providing good sources for what we say, is the next challenge for Wikipedia.

May DYKs

Slender Scotch burnet moth on a flower

Northern plains gray langur

Male vermilion flycatcher

Canada lynx

Meerkats

Hilarimorphites burmanica

Sun bear

... that coconut mites can be dispersed by wind, or perhaps by hitching a lift? (1 May)
... that Neanderthals went fishing? (1 May)
... that the Rowridge Valley in the Isle of Wight is the only known location for the wood calamint in Britain? (1 May)
... that Tetraponera penzigi is one of several species of ant that protect whistling thorn trees in East Africa from grazing giraffes and rhinoceroses? (3 May)
... that the Vietnam mouse-deer, which had been feared to have gone extinct nearly 30 years ago, was sighted again in 2019? (4 May)
... that most branchiobdellids use crayfish as hosts, living on their heads, carapaces, or claws, but in some instances inside their gill cavities? (5 May)
... that the song of the Madagascan hoopoe differs markedly from that of the African hoopoe? (5 May)
... that populations of the slender Scotch burnet (pictured), a European moth that lives in dry, lime-rich areas, have been declining? (6 May)
... that the spinosaurid dinosaur Ichthyovenator had two sails on its back? (9 May)
... that the scale insect Saissetia coffeae attacks many other plants besides coffee? (9 May)
... that entomologist Frederick Vincent Theobald wrote a five-volume monograph and sixty scientific papers on mosquitoes? (12 May)
... that the northern plains gray langur monkey (example pictured) is killed in India for food and to prevent crop raiding, despite being considered sacred by Hindus? (12 May)
... that the leech Limnatis nilotica can affect humans and livestock, entering hosts through the mouth, nose, or other orifices? (12 May)
... that while the termite Pterotermes occidentis inhabits dead blue palo verde in the Sonoran Desert, Marginitermes hubbardi prefers dead saguaro? (14 May)
... that the tree Barteria fistulosa is associated with Tetraponera aethiops, an aggressive species of ant that lives in its hollow branches and twigs? (15 May)
... that Miller's langur, one of the rarest primates in Borneo, was feared to be extinct until a 2012 study rediscovered it in an area where it was previously unknown? (16 May)
... that most of the known Gigantopithecus fossils are of teeth because the other bones are likely to have been eaten by porcupines? (17 May)
... that Tetraponera tessmanni, a very aggressive ant, is able to establish dominance over the whole of the liana in which it lives, which may be 50 m (164 ft) long? (17 May)
... that mesophyletid weevils have only been found in Burmese amber? (18 May)
... that Pyrocephalus, the genus name of the vermilion flycatcher (example pictured), literally means 'fire head'? (19 May)
... that the male bigtooth cardinalfish broods a ball of eggs in his mouth? (20 May)
... that in the Australian Journal of Herpetology, a first-year student and a high school teacher reassessed the taxonomy of Australia's entire reptile class, naming 33 novel genera and 214 new species? (20 May)
... that the Arizona dampwood termite exclusively colonizes dead parts of standing trees? (22 May)
... that Megaceroides algericus is one of only two deer species known to have been native to Africa, alongside the Barbary stag? (23 May)
... that besides eating ants and termites, the waved woodpecker feeds on fruits, berries, and seeds? (24 May)
... that populations of the Canada lynx (pictured) undergo cyclic rises and falls in line with those of the snowshoe hare? (25 May)
... that despite being known as the Mexican hydrangea, Clerodendrum bungei is neither from Mexico nor a species of hydrangea? (25 May)
... that meerkats (examples pictured) use alarm calls that can identify the type of predator posing the risk, the level of danger, and the caller itself? (27 May)
... that the frog Boophis fayi can be identified by its unusual green-and-turquoise eyes? (30 May)
... that members of the fly family Apystomyiidae (example depicted) have been found in Late Jurassic sediments in Kazakhstan? (30 May)
... that the sun bear (pictured) is the smallest of all bear species? (31 May)

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